Transcriptional adaptation of Mycobacterium tuberculosis that survives prolonged multi-drug treatment in mice.
Elizabeth A Wynn, Christian Dide-Agossou, Matthew Reichlen, Karen Rossmassler, Reem Al Mubarak, Justin J Reid, Samuel T Tabor, Sarah E M Born, Monica R Ransom, Rebecca M Davidson, Kendra N Walton, Jeanne B Benoit, Amanda Hopper, Dorothy E Loy, Allison A Bauman, Lisa M Massoudi, Gregory Dolganov, Michael Strong, Payam Nahid, Martin I Voskuil, Gregory T Robertson, Camille M Moore, Nicholas D Walter. mBio e0236323 (2023).
Host and pathogen response to bacteriophage engineered against Mycobacterium abscessus lung infection. Jerry A. Nick, Rebekah M. Dedrick, Alice L. Gray, Eszter K. Vladar, Bailey E. Smith, Krista G. Freeman, Kenneth C. Malcolm, L. Elaine Epperson, Nabeeh A. Hasan, Jo Hendrix, Kimberly Callahan, Kendra Walton, Brian Vestal, Emily Wheeler, Noel M. Rysavy, Katie Poch, Silvia Caceres, Valerie K. Lovell, Katherine B. Hisert, Vinicius Calado de Moura, Delphi Chatterjee, Prithwiraj De, Natalia Weakly, Stacey L. Martiniano, David A. Lynch, Charles L. Daley, Michael Strong, Fan Jia, Graham F. Hatfull, Rebecca M. Davidson. Cell 185, 1 - 15 (2022).
Investigating Nontuberculous Mycobacteria Transmission at the Colorado Adult Cystic Fibrosis Program
Jane E. Gross, Silvia Caceres, Katie Poch, Nabeeh A Hasan, Fan Jia, L Elaine Epperson, Ettie Lipner, Charmie Vang, Jennifer R. Honda, Matthew Strand, Vinicius Calado Nogueira de Moura, Charles L. Daley, Michael Strong, Rebecca M Davidson, Jerry A Nick. American Journal of Respiratory and Critical Care Medicine. (2022).
Culturing Mycobacteria
Elizabeth Wallace, Debra Hendrickson, Nicholas Tolli, Carolina Mehaffy, María Peña, Jerry A. Nick, Phillip Knabenbaur, Jackson Watkins, Anne Simpson, Anita G. Amin, Delphi Chatterjee, Karen M. Dobos, Ramanuj Lahiri, Linda Adams,
Michael Strong, Max Salfinger, Rebecca Bradford, Timothy T. Stedman, Marco A. Riojas, Manzour Hernando Hazbon.
Mycobacteria Protocols. Methods in Molecular Biology, vol 2314: 1-58 (2021).
Population Genomics of Mycobacterium abscessus from United States Cystic Fibrosis Care Centers. Rebecca M Davidson , Nabeeh A Hasan , L Elaine Epperson , Jeanne B Benoit , Sara M Kammlade , Adrah R Levin , Vinicius Calado de Moura , Joshua Hunkins , Natalia Weakly , Sean Beagle , Scott D Sagel ; Stacey L. Martiniano ; Max Salfinger ; Charles L. Daley ; Jerry A Nick ; Michael Strong.
Annals of the American Thoracic Society. (2021).
Genomic sequence characteristics and the empiric accuracy of short-read sequencing. Maximillian Marin, Roger Vargas Jr, Michael Harris, Brendan Jeffrey, L. Elaine Epperson, David Durbin, Michael Strong, Max Salfinger, Zamin Iqbal, Irada Akhundova, Sergo Vashakidze, Valeriu Crudu, Alex Rosenthal and Maha Reda Farhat.
BioRxiv, preprint, 2021.04.08.438862 (2021).
Defining events: 2020 in hindsight
John Protzko, Isaac Z. Tanner, Morgan Daly Dedyo, JiaJia Fu, Bhavya Perma, Daniel Ari Friedman, Ada Gabriela Blidner, Juliet Tegan Johnston, Anant Kumar Srivastava, Roland Ruscher, Andreas Kupz, Michael A. Tarselli, Felicia Beardsley, Mark Martin Jensen, Nikos Konstantinides, Divyansh Agarwal, Julia Yuen, Suchitra D. Gopinath, Michael Tran Duong, Michael Strong, Matus Sotak, Katie Burnette, Samuel Nathan Kirshner, Athanasia Nikolaou, Basant A. Ali, Benedito Alves de Oliveira Junior, Elvira Sojli.
Science 371:22-24 (2021).
NASA GeneLab RNA-Seq Consensus Pipeline: Standardized Processing of Short-Read RNA-Seq Data Eliah G. Overbey, Amanda M. Saravia-Butler, Zhe Zhang, Komal S. Rathi, Homer Fogle, Willian A. da Silveira, Richard J. Barker, Joseph J. Bass, Afshin Beheshti, Daniel C. Berrios, Elizabeth A. Blaber, Egle Cekanaviciute, Helio A. Costa, Laurence B. Davin, Kathleen M. Fisch, Samrawit G. Gebre, Matthew Geniza, Rachel Gilbert, Simon Gilroy, Gary Hardiman, Raúl Herranz, Yared H. Kidane, Colin P.S. Kruse, Michael D. Lee, Ted Liefeld, Norman G. Lewis, J. Tyson McDonald, Robert Meller, Tejaswini Mishra, Imara Y. Perera, Shayoni Ray, Sigrid S. Reinsch, Sara Brin Rosenthal, Michael Strong, Nathaniel J Szewczyk, Candice G.T. Tahimic, Deanne M. Taylor, Joshua P. Vandenbrink, Alicia Villacampa, Silvio Weging, Chris Wolverton, Sarah E. Wyatt, Luis Zea, Sylvain V. Costes, Jonathan M. Galazka.
iScience 102361 (2021).
News from a postpandemic world. Joel Henrique Ellwanger, Mpho Diphago Stanley Lekgoathi, Kartik Nemani, Michael A. Tarselli, Ahmed Al Harraq, Anna Uzonyi, Ken Dutton-Regester, Rachel Yoho, Sudhakar Srivastava, Michael Strong, Yifan Li, JiaJia Fu, Khor Waiho, Isabel Marín Beltrán, Akash Mukherjee, Tyler D. P. Brunet.
Science 369:26-29 (2020).
Nontuberculous Mycobacterial Disease and Molybdenum in Colorado Watersheds. Ettie M. Lipner, Joshua French, Carleton R. Bern, Katherine Walton-Day, David Knox, Michael Strong, D. Rebecca Prevots, James L. Crooks. International Journal of Environmental Research and Public Health, 17(11), 3854; (2020).
Seeking career clarity. Chloe Antoniou, Katie Burnette, Aaron Christensen-Quick, Monika Lewinska, Yongsheng Ji, Muhammad M. Khalifa, Athanasia Nikolaou, Pragya Srivastava, Brynn Anne Hollingsworth, Norman van Rhijn, Saumya Saurabh, Nikos Konstantinides, Ashley Barbara Heim, Eric Britt Moore, Michael Strong, Aleksandra Kosanic, Samuel Nathan Kirshner, Antarip Halder, Khor Waih. Science 368:6486, 26-28 (2020).
Nontuberculous Mycobacteria Show Differential Infectivity and Use Phospholipids to Antagonize LL-37.
Jennifer R. Honda, Tamara Hess, Rachel Carlson, Pitchaimani Kandasamy, Luisa Maria Nieto Ramirez, Grant J. Norton, Ravleen Virdi, M. Nurul Islam
, Carolina Mehaffy, Nabeeh A Hasan, L Elaine Epperson, Danny Hesser, Scott Alper, Michael Strong, Sonia C Flores, Dennis R Voelker
, Karen M Dobos, and Edward D. Chan. American Journal of Respiratory Cell and Molecular Biology 62:354–363 (2020).
Mycobacterial biomaterials and resources for researchers
Manzour Hernando Hazbon, Leen Rigouts, Marco Schito, Matthew Ezewudo, Takuji Kudo, Takashi Itoh, Moriya Ohkuma, Katalin Kiss, Linhuan Wu, Juncai Ma, Moriyuki Hamada, Michael Strong,
Max Salfinger, Charles L Daley, Jerry A Nick, Jung-Sook Lee, Nalin Rastogi, David Couvin, Raquel Hurtado-Ortiz, Chantal Bizet, Anita Suresh, Timothy Rodwell,
Audrey Albertini, Karen A Lacourciere, Ana Deheer-Graham, Sarah Alexander, Julie E Russell, Rebecca Bradford, Marco A Riojas.
Pathogens and Disease 76:042 (2018).
MW 2.0. Michael Strong. Science, 359: 170-171 (2018).
Complete Genome Sequence of Mycobacterium chimaera Strain CDC2015-22-71. Nabeeh A Hasan, Adrian Lawsin, K. Allison Perry, Efe Alyanak, Nadege C. Toney, Allyson Malecha, Ms. Lori A Rowe, Dhwani Batra, Heather Moulton-Meissner, Jeffrey R. Miller, Michael Strong, Alison Laufer Halpin. Genome Announcements 5:31 e00693-17 (2017).
Environmental Nontuberculous
Mycobacteria in the Hawaiian Islands Jennifer R. Honda, Nabeeh A. Hasan, Rebecca M. Davidson, Myra D. Williams, L. Elaine Epperson, Paul R. Reynolds, Terry R. Smith, Elena Iakhiaeva, Matthew J. Bankowski, Richard J. Wallace Jr., Edward D. Chan, Joseph O. Falkinham III, Michael Strong.
PLOS Neglected Tropical Diseases, 10(10): e0005068. (2016).
Adaptation of M. tuberculosis to impaired host immunity in HIV-infected patients.
Nicholas D. Walter, Bouke C. de Jong, Benjamin J. Garcia, Gregory M. Dolganov, William Worodria, Patrick Byanyima, Emmanuel Musisi, Laurence Huang, Edward D. Chan, Tran T. Van, Martin Antonio, Abigail Ayorinde, Midori Kato-Maeda, Payam Nahid, Ann M. Leung, Andrew Yen, Tasha E. Fingerlin, Katerina Kechris, Michael Strong, Martin I. Voskuil, J. Lucian Davis, Gary K. Schoolnik.
Journal of Infectious Diseases, 214: 1205 - 1211 (2016).
Draft Genome Sequence of Mycobacterium chelonae Type Strain
ATCC 35752. Nabeeh A. Hasan, Rebecca M. Davidson, Vinicius Calado Nogueira de Moura, Benjamin J. Garcia, Paul R. Reynolds, L. Elaine Epperson, Eveline Farias-Hesson, Mary Ann DeGroote, Mary Jackson, Michael Strong. Genome Announcements, e00536. (2015).
Blood transcriptional biomarkers for active TB among US patients: A case-control study with systematic cross-classifier evaluation. Nicholas D Walter, Mikaela A. Miller, Joshua Vasquezd, Marc Weiner, Adam Chapman, Melissa Engle, Michael Higgins, Amy M. Quinones, Vanessa Roselli, Elizabeth Canon, Christina Yoon, Adithya Cattamanchi, J Lucian Davis, Tzu Phang, Robert S Stearman, Gargi Datta, Benjamin J Garcia, Charles L Daley, Michael Strong, Katerina Kechris, Tasha E. Fingerlin, Randall Reves, Mark W Geraci. Journal of Clinical Microbiology 18 November 2015, doi: 10.1128/JCM.01990-15 (2015).
Transcriptional adaptation of drug-tolerant Mycobacterium tuberculosis during treatment of human tuberculosis. Nicholas D. Walter, Gregory M. Dolganov, Benjamin J. Garcia, William Worodria, Alfred Andama, Emmanuel Musisi, Irene Ayakaka, Tran T. Van, Martin I. Voskuil, Bouke C. de Jong, Rebecca M. Davidson, Tasha E. Fingerlin, Katerina Kechris, Claire Palmer, Payam Nahid, Charles L. Daley, Mark Geraci, Laurence Huang, Adithya Cattamanchi, Michael Strong, Gary K. Schoolnik, J. Lucian Davis. Journal of Infectious Diseases. 212: 990-998 (2015).
High Relatedness among Mycobacterium abscessus subsp. massiliense Strains from Geographically Distant Outbreaks. Herv� Tettelin, Rebecca M. Davidson, Sonia Agrawal, Moira L. Aitken, Shamira Shallom, Nabeeh A. Hasan, Michael Strong, Vinicius Calado Nogueira de Moura, Mary Ann De Groote, Rafael S. Duarte, Erin Hine, Sushma Parankush, Qi Su, Sean C. Daugherty, Claire M. Fraser, Barbara A. Brown-Elliott, Richard J. Wallace Jr., Steven M. Holland, Elizabeth P. Sampaio, Kenneth N. Olivier, Mary Jackson, Adrian M. Zelazny. Emerging Infectious Diseases, 20:3 (2014).
HspX Vaccination and Role in Virulence in the Guinea Pig Model of Tuberculosis. Agatha E. Wieczorek, Jolynn L. Troudt, Phillip Knabenbauer, Jennifer Taylor, Rebecca L. Pavlicek, Russell Karls, Anne Hess, Rebecca M. Davidson, Michael Strong, Helle Bielefeldt-Ohmann, Angelo A. Izzo, Karen M. Dobos. Pathogens and Disease, Feb 24 (2014).
Research, Collaboration, and Open Science using Web 2.0.
Kevin Shee*, Michael Strong*, Nicholas J. Guido, Robert Lue, George M. Church, Alain Viel. *Equal contribution, Journal of Microbiology and Biology Education, 11:2 p130-134, (2010).
The Protein Network as a Tool for Finding Novel Drug Targets.
Michael Strong and David Eisenberg. Book Chapter in Systems Biological Approaches in Infectious Diseases. Edited by H.I.M Boshoff and C.E. Barry III, Birkhauser. Verlag Publishing. Progress in Drug Research, 64:191, 193-215 (2007). Link